Detailed information of SNP:
|
SNP ID:
sf1215056876(Gbrowse)
Chromosome: chr12 Position: 15056876 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 85.47% | 14.53% |
| All Indica | 733 | 83.36% | 16.64% |
| All Japonica | 483 | 89.44% | 10.56% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 340 | 82.06% | 17.94% |
| Indica II | 192 | 81.25% | 18.75% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 85 | 69.41% | 30.59% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215056876 | C->T | LOC_Os12g25940(LOC_Os12g25940.1) | Non-Synonymous SNP |