Detailed information of SNP:
|
SNP ID:
sf1215057269(Gbrowse)
Chromosome: chr12 Position: 15057269 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1301 | 95.77% | 4.23% |
| All Indica | 730 | 95.21% | 4.79% |
| All Japonica | 451 | 96.90% | 3.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 96.69% | 3.31% |
| Indica II | 173 | 89.02% | 10.98% |
| Indica Intermediate | 195 | 97.95% | 2.05% |
| Temperate Japonica | 326 | 99.39% | 0.61% |
| Tropical Japonica | 69 | 86.96% | 13.04% |
| Japonica Intermediate | 56 | 94.64% | 5.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215057269 | C->T | LOC_Os12g25940(LOC_Os12g25940.1) | INTRON |