Detailed information of SNP:
|
SNP ID:
sf1215057273(Gbrowse)
Chromosome: chr12 Position: 15057273 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.27% | 31.73% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 496 | 23.39% | 76.61% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215057273 | T->C | LOC_Os12g25940(LOC_Os12g25940.1) | INTRON |