Detailed information of SNP:
|
SNP ID:
sf1215057719(Gbrowse)
Chromosome: chr12 Position: 15057719 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 81.13% | 18.87% |
| All Indica | 797 | 76.54% | 23.46% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215057719 | C->T | LOC_Os12g25940(LOC_Os12g25940.1) | Non-Synonymous SNP |