Detailed information of SNP:
|
SNP ID:
sf1215074073(Gbrowse)
Chromosome: chr12 Position: 15074073 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1207 | 65.87% | 34.13% |
| All Indica | 637 | 49.14% | 50.86% |
| All Japonica | 474 | 89.87% | 10.13% |
| Aus | 48 | 68.75% | 31.25% |
| Indica I | 298 | 57.05% | 42.95% |
| Indica II | 170 | 32.35% | 67.65% |
| Indica Intermediate | 169 | 52.07% | 47.93% |
| Temperate Japonica | 328 | 98.78% | 1.22% |
| Tropical Japonica | 83 | 59.04% | 40.96% |
| Japonica Intermediate | 63 | 84.13% | 15.87% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215074073 | C->T | LOC_Os12g25980(LOC_Os12g25980.1) | INTRON |