Detailed information of SNP:
|
SNP ID:
sf1215077123(Gbrowse)
Chromosome: chr12 Position: 15077123 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1217 | 51.52% | 48.48% |
| All Indica | 656 | 31.86% | 68.14% |
| All Japonica | 457 | 85.56% | 14.44% |
| Aus | 59 | 22.03% | 77.97% |
| Indica I | 286 | 31.47% | 68.53% |
| Indica II | 189 | 27.51% | 72.49% |
| Indica Intermediate | 181 | 37.02% | 62.98% |
| Temperate Japonica | 320 | 96.88% | 3.12% |
| Tropical Japonica | 72 | 47.22% | 52.78% |
| Japonica Intermediate | 65 | 72.31% | 27.69% |
| Group VI/Aromatic | 9 | 11.11% | 88.89% |
| Intermediate | 36 | 36.11% | 63.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215077123 | T->C | LOC_Os12g25980(LOC_Os12g25980.1) | Non-Synonymous SNP |