Detailed information of SNP:
|
SNP ID:
sf1215088067(Gbrowse)
Chromosome: chr12 Position: 15088067 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 67.09% | 32.91% |
| All Indica | 792 | 91.67% | 8.33% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215088067 | G->A | LOC_Os12g25990(LOC_Os12g25990.1) | Non-Synonymous SNP |