Detailed information of SNP:
|
SNP ID:
sf1215089107(Gbrowse)
Chromosome: chr12 Position: 15089107 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 55.47% | 44.53% |
| All Indica | 758 | 35.75% | 64.25% |
| All Japonica | 496 | 82.66% | 17.34% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 358 | 34.36% | 65.64% |
| Indica II | 203 | 33.00% | 67.00% |
| Indica Intermediate | 197 | 41.12% | 58.88% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215089107 | C->T | LOC_Os12g25990(LOC_Os12g25990.1) | Synonymous |