Detailed information of SNP:
|
SNP ID:
sf1215091699(Gbrowse)
Chromosome: chr12 Position: 15091699 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1282 | 50.16% | 49.84% |
| All Indica | 675 | 53.33% | 46.67% |
| All Japonica | 492 | 43.09% | 56.91% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 293 | 65.53% | 34.47% |
| Indica II | 196 | 31.63% | 68.37% |
| Indica Intermediate | 186 | 56.99% | 43.01% |
| Temperate Japonica | 333 | 53.75% | 46.25% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215091699 | T->C | LOC_Os12g25990(LOC_Os12g25990.1) | INTRON |