Detailed information of SNP:
|
SNP ID:
sf1215093651(Gbrowse)
Chromosome: chr12 Position: 15093651 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 51.32% | 48.68% |
| All Indica | 785 | 72.23% | 27.77% |
| All Japonica | 496 | 18.55% | 81.45% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 369 | 72.09% | 27.91% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 205 | 67.32% | 32.68% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215093651 | A->C | INTERGENIC | None |