Detailed information of SNP:
|
SNP ID:
sf1215093674(Gbrowse)
Chromosome: chr12 Position: 15093674 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 53.28% | 46.72% |
| All Indica | 774 | 75.06% | 24.94% |
| All Japonica | 494 | 19.64% | 80.36% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 362 | 75.97% | 24.03% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 201 | 70.15% | 29.85% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215093674 | T->C | INTERGENIC | None |