Detailed information of SNP:
|
SNP ID:
sf1215094202(Gbrowse)
Chromosome: chr12 Position: 15094202 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 57.67% | 42.33% |
| All Indica | 760 | 38.55% | 61.45% |
| All Japonica | 483 | 83.44% | 16.56% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 359 | 31.20% | 68.80% |
| Indica II | 206 | 40.78% | 59.22% |
| Indica Intermediate | 195 | 49.74% | 50.26% |
| Temperate Japonica | 329 | 95.74% | 4.26% |
| Tropical Japonica | 86 | 45.35% | 54.65% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215094202 | G->A | INTERGENIC | None |