Detailed information of SNP:
|
SNP ID:
sf1215096675(Gbrowse)
Chromosome: chr12 Position: 15096675 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1227 | 53.06% | 46.94% |
| All Indica | 663 | 28.51% | 71.49% |
| All Japonica | 467 | 88.22% | 11.78% |
| Aus | 48 | 60.42% | 39.58% |
| Indica I | 308 | 26.62% | 73.38% |
| Indica II | 182 | 32.42% | 67.58% |
| Indica Intermediate | 173 | 27.75% | 72.25% |
| Temperate Japonica | 330 | 96.36% | 3.64% |
| Tropical Japonica | 76 | 60.53% | 39.47% |
| Japonica Intermediate | 61 | 78.69% | 21.31% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215096675 | C->T | INTERGENIC | None |