Detailed information of SNP:
|
SNP ID:
sf1215103643(Gbrowse)
Chromosome: chr12 Position: 15103643 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 95.31% | 4.69% |
| All Indica | 775 | 95.87% | 4.13% |
| All Japonica | 488 | 93.65% | 6.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 97.01% | 2.99% |
| Indica II | 198 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 90 | 78.89% | 21.11% |
| Japonica Intermediate | 65 | 90.77% | 9.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215103643 | G->A | INTERGENIC | None |