Detailed information of SNP:
|
SNP ID:
sf1215104194(Gbrowse)
Chromosome: chr12 Position: 15104194 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 75.09% | 24.91% |
| All Indica | 772 | 64.25% | 35.75% |
| All Japonica | 493 | 88.24% | 11.76% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 361 | 62.60% | 37.40% |
| Indica II | 202 | 61.88% | 38.12% |
| Indica Intermediate | 209 | 69.38% | 30.62% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 59.14% | 40.86% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215104194 | C->T | INTERGENIC | None |