Detailed information of SNP:
|
SNP ID:
sf1215104305(Gbrowse)
Chromosome: chr12 Position: 15104305 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 95.78% | 4.22% |
| All Indica | 787 | 94.03% | 5.97% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 365 | 93.70% | 6.30% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215104305 | C->T | INTERGENIC | None |