Detailed information of SNP:
|
SNP ID:
sf1215104426(Gbrowse)
Chromosome: chr12 Position: 15104426 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 95.08% | 4.92% |
| All Indica | 755 | 92.45% | 7.55% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 356 | 90.17% | 9.83% |
| Indica II | 204 | 97.06% | 2.94% |
| Indica Intermediate | 195 | 91.79% | 8.21% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215104426 | T->G | INTERGENIC | None |