Detailed information of SNP:
|
SNP ID:
sf1215110368(Gbrowse)
Chromosome: chr12 Position: 15110368 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.84% | 43.16% |
| All Indica | 798 | 45.36% | 54.64% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 27.20% | 72.80% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 42.38% | 57.62% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215110368 | A->G | LOC_Os12g26010(LOC_Os12g26010.1) | Non-Synonymous SNP |