Detailed information of SNP:
|
SNP ID:
sf1215122508(Gbrowse)
Chromosome: chr12 Position: 15122508 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1167 | 93.66% | 6.34% |
| All Indica | 586 | 90.96% | 9.04% |
| All Japonica | 465 | 95.91% | 4.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 310 | 93.87% | 6.13% |
| Indica II | 100 | 87.00% | 13.00% |
| Indica Intermediate | 176 | 88.07% | 11.93% |
| Temperate Japonica | 326 | 96.32% | 3.68% |
| Tropical Japonica | 76 | 94.74% | 5.26% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215122508 | T->A | INTERGENIC | None |