Detailed information of SNP:
|
SNP ID:
sf1215122914(Gbrowse)
Chromosome: chr12 Position: 15122914 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 75.09% | 24.91% |
| All Indica | 786 | 68.45% | 31.55% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 50.54% | 49.46% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 202 | 77.72% | 22.28% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215122914 | A->G | INTERGENIC | None |