Detailed information of SNP:
|
SNP ID:
sf1215123663(Gbrowse)
Chromosome: chr12 Position: 15123663 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.39% | 30.61% |
| All Indica | 799 | 59.20% | 40.80% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 334 | 91.92% | 8.08% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215123663 | C->T | INTERGENIC | None |