Detailed information of SNP:
|
SNP ID:
sf1215126730(Gbrowse)
Chromosome: chr12 Position: 15126730 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 93.87% | 6.13% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215126730 | C->G | LOC_Os12g26044(LOC_Os12g26044.2) | INTRON |
| sf1215126730 | C->G | LOC_Os12g26044(LOC_Os12g26044.1) | INTRON |
| sf1215126730 | C->G | LOC_Os12g26044(LOC_Os12g26044.3) | INTRON |