Detailed information of SNP:
|
SNP ID:
sf1215128310(Gbrowse)
Chromosome: chr12 Position: 15128310 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 797 | 44.29% | 55.71% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 31.55% | 68.45% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215128310 | C->A | INTERGENIC | None |