Detailed information of SNP:
|
SNP ID:
sf1215133004(Gbrowse)
Chromosome: chr12 Position: 15133004 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.46% | 7.54% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215133004 | A->G | LOC_Os12g26060(LOC_Os12g26060.1) | INTRON |