Detailed information of SNP:
|
SNP ID:
sf1215150798(Gbrowse)
Chromosome: chr12 Position: 15150798 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.17% | 43.83% |
| All Indica | 799 | 46.81% | 53.19% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 27.20% | 72.80% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215150798 | T->C | LOC_Os12g26080(LOC_Os12g26080.1) | Non-Synonymous SNP |