Detailed information of SNP:
|
SNP ID:
sf1215154229(Gbrowse)
Chromosome: chr12 Position: 15154229 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.21% | 41.79% |
| All Indica | 799 | 50.06% | 49.94% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 32.00% | 68.00% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215154229 | C->A | INTERGENIC | None |