Detailed information of SNP:
|
SNP ID:
sf1215155308(Gbrowse)
Chromosome: chr12 Position: 15155308 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.40% | 41.60% |
| All Indica | 797 | 50.44% | 49.56% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 32.62% | 67.38% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215155308 | G->T | INTERGENIC | None |