Detailed information of SNP:
|
SNP ID:
sf1215155528(Gbrowse)
Chromosome: chr12 Position: 15155528 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.71% | 47.29% |
| All Indica | 799 | 41.55% | 58.45% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 26.40% | 73.60% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215155528 | T->C | INTERGENIC | None |