Detailed information of SNP:
|
SNP ID:
sf1215156905(Gbrowse)
Chromosome: chr12 Position: 15156905 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.00% | 38.00% |
| All Indica | 793 | 51.70% | 48.30% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 33.60% | 66.40% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 208 | 54.33% | 45.67% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215156905 | C->T | INTERGENIC | None |