Detailed information of SNP:
|
SNP ID:
sf1215156966(Gbrowse)
Chromosome: chr12 Position: 15156966 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 798 | 47.37% | 52.63% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 48.10% | 51.90% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215156966 | T->C | INTERGENIC | None |