Detailed information of SNP:
|
SNP ID:
sf1215161206(Gbrowse)
Chromosome: chr12 Position: 15161206 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 76.36% | 23.64% |
| All Indica | 797 | 64.99% | 35.01% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215161206 | A->T | INTERGENIC | None |