Detailed information of SNP:
|
SNP ID:
sf1215167626(Gbrowse)
Chromosome: chr12 Position: 15167626 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.23% | 17.77% |
| All Indica | 799 | 74.59% | 25.41% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215167626 | C->A | INTERGENIC | None |