Detailed information of SNP:
|
SNP ID:
sf1215168957(Gbrowse)
Chromosome: chr12 Position: 15168957 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 78.00% | 22.00% |
| All Indica | 798 | 67.54% | 32.46% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215168957 | T->G | INTERGENIC | None |