Detailed information of SNP:
|
SNP ID:
sf1215169715(Gbrowse)
Chromosome: chr12 Position: 15169715 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 63.63% | 36.37% |
| All Indica | 796 | 54.52% | 45.48% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 40.48% | 59.52% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215169715 | A->G | INTERGENIC | None |