Detailed information of SNP:
|
SNP ID:
sf1215169813(Gbrowse)
Chromosome: chr12 Position: 15169813 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 63.86% | 36.14% |
| All Indica | 795 | 55.09% | 44.91% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 373 | 40.21% | 59.79% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215169813 | C->T | INTERGENIC | None |