Detailed information of SNP:
|
SNP ID:
sf1215169931(Gbrowse)
Chromosome: chr12 Position: 15169931 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 79.31% | 20.69% |
| All Indica | 772 | 74.22% | 25.78% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 58 | 55.17% | 44.83% |
| Indica I | 362 | 67.96% | 32.04% |
| Indica II | 207 | 90.82% | 9.18% |
| Indica Intermediate | 203 | 68.47% | 31.53% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215169931 | A->T | INTERGENIC | None |