Detailed information of SNP:
|
SNP ID:
sf1215171510(Gbrowse)
Chromosome: chr12 Position: 15171510 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 66.36% | 33.64% |
| All Indica | 790 | 58.73% | 41.27% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 45.70% | 54.30% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 207 | 56.52% | 43.48% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215171510 | C->T | INTERGENIC | None |