Detailed information of SNP:
|
SNP ID:
sf1215171922(Gbrowse)
Chromosome: chr12 Position: 15171922 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 66.83% | 33.17% |
| All Indica | 795 | 59.37% | 40.63% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 46.52% | 53.48% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215171922 | T->A | INTERGENIC | None |