Detailed information of SNP:
|
SNP ID:
sf1215172523(Gbrowse)
Chromosome: chr12 Position: 15172523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 63.89% | 36.11% |
| All Indica | 798 | 55.01% | 44.99% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 40.91% | 59.09% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215172523 | G->A | INTERGENIC | None |