Detailed information of SNP:
|
SNP ID:
sf1215175681(Gbrowse)
Chromosome: chr12 Position: 15175681 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 51.75% | 48.25% |
| All Indica | 757 | 67.77% | 32.23% |
| All Japonica | 494 | 19.43% | 80.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 93.21% | 6.79% |
| Indica II | 198 | 20.20% | 79.80% |
| Indica Intermediate | 191 | 68.06% | 31.94% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 91 | 54.95% | 45.05% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215175681 | G->A | INTERGENIC | None |