Detailed information of SNP:
|
SNP ID:
sf1215180075(Gbrowse)
Chromosome: chr12 Position: 15180075 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 54.72% | 45.28% |
| All Indica | 753 | 42.10% | 57.90% |
| All Japonica | 493 | 81.34% | 18.66% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 357 | 28.57% | 71.43% |
| Indica II | 200 | 62.50% | 37.50% |
| Indica Intermediate | 196 | 45.92% | 54.08% |
| Temperate Japonica | 334 | 93.11% | 6.89% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215180075 | T->C | INTERGENIC | None |