Detailed information of SNP:
|
SNP ID:
sf1215182150(Gbrowse)
Chromosome: chr12 Position: 15182150 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 51.10% | 48.90% |
| All Indica | 796 | 38.57% | 61.43% |
| All Japonica | 494 | 80.57% | 19.43% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 31.02% | 68.98% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215182150 | T->C | INTERGENIC | None |