Detailed information of SNP:
|
SNP ID:
sf1215185118(Gbrowse)
Chromosome: chr12 Position: 15185118 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 88.67% | 11.33% |
| All Indica | 761 | 94.48% | 5.52% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 195 | 92.31% | 7.69% |
| Indica Intermediate | 194 | 95.36% | 4.64% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215185118 | G->C | INTERGENIC | None |