Detailed information of SNP:
|
SNP ID:
sf1215203762(Gbrowse)
Chromosome: chr12 Position: 15203762 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 52.18% | 47.82% |
| All Indica | 796 | 38.69% | 61.31% |
| All Japonica | 481 | 83.16% | 16.84% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 372 | 9.95% | 90.05% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 319 | 97.81% | 2.19% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215203762 | T->A | INTERGENIC | None |