Detailed information of SNP:
|
SNP ID:
sf1215207249(Gbrowse)
Chromosome: chr12 Position: 15207249 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.07% | 6.93% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 494 | 89.68% | 10.32% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 95.18% | 4.82% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215207249 | C->T | INTERGENIC | None |