Detailed information of SNP:
|
SNP ID:
sf1215209287(Gbrowse)
Chromosome: chr12 Position: 15209287 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 98.07% | 1.93% |
| All Indica | 795 | 99.75% | 0.25% |
| All Japonica | 430 | 94.88% | 5.12% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 277 | 97.83% | 2.17% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215209287 | G->A | INTERGENIC | None |