Detailed information of SNP:
|
SNP ID:
sf1215210231(Gbrowse)
Chromosome: chr12 Position: 15210231 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 80.57% | 19.43% |
| All Indica | 785 | 80.64% | 19.36% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 365 | 75.34% | 24.66% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 208 | 79.33% | 20.67% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215210231 | G->A | INTERGENIC | None |