Detailed information of SNP:
|
SNP ID:
sf1215213786(Gbrowse)
Chromosome: chr12 Position: 15213786 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 80.33% | 19.67% |
| All Indica | 783 | 80.08% | 19.92% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 366 | 81.42% | 18.58% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 205 | 69.76% | 30.24% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215213786 | G->A | INTERGENIC | None |