Detailed information of SNP:
|
SNP ID:
sf1215217481(Gbrowse)
Chromosome: chr12 Position: 15217481 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 54.04% | 45.96% |
| All Indica | 795 | 69.31% | 30.69% |
| All Japonica | 494 | 22.06% | 77.94% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 209 | 41.15% | 58.85% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 333 | 9.01% | 90.99% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215217481 | G->T | INTERGENIC | None |