Detailed information of SNP:
|
SNP ID:
sf1215218572(Gbrowse)
Chromosome: chr12 Position: 15218572 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 80.71% | 19.29% |
| All Indica | 795 | 73.08% | 26.92% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 211 | 65.40% | 34.60% |
| Indica Intermediate | 209 | 69.38% | 30.62% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215218572 | C->T | INTERGENIC | None |